species:   Cocin
pid:       PID1283
parent:    cci-milR-28
paralog:   
locus:     scaffold_392:9771-9828
matures:   ['UAGGAUUCGACGAUGGCG', 'CCAAUGUUGAACCCUAGAUCGC']
srr:       SRR9972090
genome:    /Users/jax/+Genomes/Fungal_genomes/Cocin.Copci_AmutBmut1_AssemblyScaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972090.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lau2020-gn.SRR9972090.cram scaffold_392:9771-9828

1 out of bounds
1 alignments
1 proper strand
1 stranded perfect matches

********************            ************************* 
UAGGAUUCGACGAUGGCGAGAGGGACCUGCCUCGUCCAAUGUUGAACCCUAGAUCGCU
((((.(((((((.(((...((((......))))..))).))))))).)))).......
UAGGAUUCGACGAUGGCG---------------------------------------- l=18 a=0 c
-----------------------------------CCAAUGUUGAACCCUAGAUCGC- l=22 a=0 c*
UAGGAUUCGACGAUGGCGAG-------------------------------------- l=20 a=1 ma
----------------------------------UCCAAUGUUGAACCCUAGAUCGC- l=23 a=0 ma*

UAGGAUUCGACGAUGGCGAG-------------------------------------- l=20 a=1 (ma)

mb-00011
ax-1001111
ku-01
ss-110111101010
fn-011
